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mSystems
Journal Prestige (SJR): 3.233  Citation Impact (citeScore): 5 Number of Followers: 5  Open Access journalISSN (Online) 2379-5077 Published by American Society for Microbiology  [17 journals]
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- More Robust Co-Occurrence Patterns and Stronger Dispersal Limitations of
Bacterial Communities in Wet than Dry Seasons of Riparian Wetlands
Authors: Liyan Zhang; Yi Li, Xiangxin Sun, Jonathan M. Adams, Longfei Wang, Huanjun Zhang, Haiyan Chu aKey Laboratory of Integrated Regulation Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China eUniversity of Chinese Academy of Sciences, Beijing, China, Michaeline B. N. Albright
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-23T07:00:00Z
DOI: 10.1128/msystems.01187-22
- Discovery of the Streamlined Haloarchaeon Halorutilus salinus, Comprising
a New Order Widespread in Hypersaline Environments across the World
Authors: Ana Durán-Viseras; Cristina Sánchez-Porro, Tomeu Viver, Konstantinos T. Konstantinidis, Antonio Ventosa aDepartment of Microbiology Microbial Biodiversity, Mediterranean Institute for Advanced Studies (IMEDEA, CSIC-UIB), Esporles, Spain, Xiao-Hua Zhang
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-21T07:00:00Z
DOI: 10.1128/msystems.01198-22
- Metagenomic Discovery of “Candidatus Parvarchaeales”-Related Lineages
Sheds Light on Adaptation and Diversification from Neutral-Thermal to
Acidic-Mesothermal Environments
Authors: Yang-Zhi Rao; Yu-Xian Li, Ze-Wei Li, Yan-Ni Qu, Yan-Ling Qi, Jian-Yu Jiao, Wen-Sheng Shu, Zheng-Shuang Hua, Wen-Jun Li aState Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-Sen University, Guangzhou, People’s Republic of China bGuangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou, People’s Republic of China cSouthern Marine Science Geography, Chinese Academy of Sciences, Urumqi, People’s Republic of China, Rachel Mackelprang
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-21T07:00:00Z
DOI: 10.1128/msystems.01252-22
- Evidence for a Putative Isoprene Reductase in Acetobacterium wieringae
Authors: Miriam Kronen; Xabier Vázquez-Campos, Marc R. Wilkins, Matthew Lee, Michael J. Manefield aUNSW Water Research Centre, School of Civil Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia, Chris Greening
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-21T07:00:00Z
DOI: 10.1128/msystems.00119-23
- More is Different: Metabolic Modeling of Diverse Microbial Communities
Authors: Christian Diener; Sean M. Gibbons aInstitute for Systems Biology, Seattle, Washington, USA bDepartments of Bioengineering Genome Sciences, University of Washington, Seattle, Washington, USA ceScience Institute, University of Washington, Seattle, Washington, USA, Jack A. Gilbert
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-21T07:00:00Z
DOI: 10.1128/msystems.01270-22
- Correction for Boysen et al., “Particulate Metabolites and Transcripts
Reflect Diel Oscillations of Microbial Activity in the Surface Ocean”
Authors: Angela K. Boysen; Laura T. Carlson, Bryndan P. Durham, Ryan D. Groussman, Frank O. Aylward, François Ribalet, Katherine R. Heal, Angelicque E. White, Edward F. DeLong, E. Virginia Armbrust, Anitra E. Ingalls
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-21T07:00:00Z
DOI: 10.1128/msystems.01083-22
- Characteristic Metabolic Changes in Skeletal Muscle Due to Vibrio
vulnificus Infection in a Wound Infection Model
Authors: Kai Ishida; Takaaki Shimohata, Yuna Kanda, Anh Quoc Nguyen, Rumiko Masuda, Kohei Yamazaki, Takashi Uebanso, Kazuaki Mawatari, Takashige Kashimoto, Akira Takahashi aDepartment of Preventive Environment Food Management, Institute of Biomedical Sciences, Tokushima University Graduate School, Tokushima, Japan fLaboratory of Veterinary Public Health, School of Veterinary Medicine, Kitasato University, Towada, Aomori, Japan, Joshua E. Elias
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-20T07:00:00Z
DOI: 10.1128/msystems.00682-22
- Correction for Heal et al., “Marine Community Metabolomes Carry
Fingerprints of Phytoplankton Community Composition”
Authors: Katherine R. Heal; Bryndan P. Durham, Angela K. Boysen, Laura T. Carlson, Wei Qin, François Ribalet, Angelicque E. White, Randelle M. Bundy, E. Virginia Armbrust, Anitra E. Ingalls
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-20T07:00:00Z
DOI: 10.1128/msystems.01086-22
- Determinants of Total and Active Microbial Communities Associated with
Cyanobacterial Aggregates in a Eutrophic Lake
Authors: Dezhuang Gao; Zhijie Chen, Junyi Zhang, Chao Wang, Yuan Ma, Jiahui Wang, Jie Deng aShanghai Key Lab for Urban Ecological Processes Environmental Sciences, East China Normal University, Shanghai, China bJiangsu Wuxi Environmental Monitoring Center, Jiangsu, China cShanghai Institute of Eco-Chongming, Shanghai, China, Marcela Hernandez
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-16T07:00:00Z
DOI: 10.1128/msystems.00992-22
- Genomic Insights into Niche Partitioning across Sediment Depth among
Anaerobic Methane-Oxidizing Archaea in Global Methane Seeps
Authors: Jiawei Chen; Yingdong Li, Cheng Zhong, Zhimeng Xu, Guangyuan Lu, Hongmei Jing, Hongbin Liu aSouthern Marine Science Human Health, City University of Hong Kong Shenzhen Research Institute, Shenzhen, China, Michael S. Rappe
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-16T07:00:00Z
DOI: 10.1128/msystems.01179-22
- Computational Modeling of the Chlamydial Developmental Cycle Reveals a
Potential Role for Asymmetric Division
Authors: Travis J. Chiarelli; Nicole A. Grieshaber, Cody Appa, Scott S. Grieshaber aDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, USA, Neha Garg
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-16T07:00:00Z
DOI: 10.1128/msystems.00053-23
- Microbial and Viral Genome and Proteome Nitrogen Demand Varies across
Multiple Spatial Scales within a Marine Oxygen Minimum Zone
Authors: Daniel Muratore; Anthony D. Bertagnolli, Laura A. Bristow, Bo Thamdrup, Joshua S. Weitz, Frank J. Stewart aGeorgia Institute of Technology, Interdisciplinary Program in Quantitative Biosciences, School of Biological Sciences, Atlanta, Georgia, USA bGeorgia Institute of Technology, School of Biological Sciences, Atlanta, Georgia, USA cSanta Fe Institute, Santa Fe, New Mexico, USA dMontana State University, Department of Microbiology Infection, Atlanta, Georgia, USA, Jean-Baptiste Raina
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-15T07:00:00Z
DOI: 10.1128/msystems.01095-22
- Trade-Offs between Competitive Ability and Resistance to Top-Down Control
in Marine Microbes
Authors: Jinny Wu Yang; Feng-Hsun Chang, Yi-Chun Yeh, An-Yi Tsai, Kuo-Ping Chiang, Fuh-Kwo Shiah, Gwo-Ching Gong, Chih-hao Hsieh aEcology Evolutionary Biology, National Taiwan University, Taipei, Taiwan hNational Center for Theoretical Sciences, Taipei, Taiwan, Jack A. Gilbert, Eva Teira
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-14T07:00:00Z
DOI: 10.1128/msystems.01017-22
- A Genome-Scale Atlas Reveals Complex Interplay of Transcription and
Translation in an Archaeon
Authors: Alan P. R. Lorenzetti; Ulrike Kusebauch, Lívia S. Zaramela, Wei-Ju Wu, João P. P. de Almeida, Serdar Turkarslan, Adrián L. G. de Lomana, José V. Gomes-Filho, Ricardo Z. N. Vêncio, Robert L. Moritz, Tie Koide, Nitin S. Baliga aDepartment of Biochemistry Cellular Biology Program, University of Washington, Seattle, Washington, USA gLawrence Berkeley National Lab, Berkeley, California, USA, Marnix Medema
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-13T07:00:00Z
DOI: 10.1128/msystems.00816-22
- Note on the Difference between the Principal Balance Analysis with
NearestBalance and Constrained Methods
Authors: Vera E. Odintsova; Natalia Klimenko, Alexander V. Tyakht aAtlas Biomed Group - Knomx LLC, Moscow, Russia bCenter for Precision Genome Editing Genetic Technologies for Biomedicine, Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russia, Jack A. Gilbert
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-13T07:00:00Z
DOI: 10.1128/msystems.00164-23
- Lipidomics and Comparative Metabolite Excretion Analysis of Methanogenic
Archaea Reveal Organism-Specific Adaptations to Varying Temperatures and
Substrate Concentrations
Authors: Ruth-Sophie Taubner; Lydia M. F. Baumann, Michael Steiner, Kevin Pfeifer, Barbara Reischl, Kordian Korynt, Thorsten Bauersachs, Barbara Mähnert, Elisabeth L. Clifford, Jörn Peckmann, Bernhard Schuster, Daniel Birgel, Simon K.-M. R. Rittmann aArchaea Physiology & Biotechnology Group, Department of Functional Evolutionary Ecology, Universität Wien, Vienna, Austria, Julie A. Huber
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-07T08:00:00Z
DOI: 10.1128/msystems.01159-22
- Phylogenetic Analysis and Virulence Characteristics of
Methicillin-Resistant Staphylococcus aureus ST45 in China: a
Hyper-Virulent Clone Associated with Bloodstream Infections
Authors: Xinyi Wang; Xiaocui Wu, Li Shen, Lulin Rao, Bingjie Wang, Huilin Zhao, Jiao Zhang, Yanghua Xiao, Yinjuan Guo, Yanlei Xu, Liang Chen, Fangyou Yu aDepartment of Clinical Laboratory, Shanghai Pulmonary Hospital, School of Medicine, Tongji University, Shanghai, China bCenter for Discovery Innovation, Hackensack Meridian Health, Nutley, New Jersey, USA cDepartment of Medical Sciences, Hackensack Meridian School of Medicine, Nutley, New Jersey, USA, Youjun Feng
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-06T08:00:00Z
DOI: 10.1128/msystems.00029-23
- Application of Traditional Vaccine Development Strategies to SARS-CoV-2
Authors: Halie M. Rando; Ronan Lordan, Alexandra J. Lee, Amruta Naik, Nils Wellhausen, Elizabeth Sell, Likhitha Kolla, , Anthony Gitter, Casey S. Greene aDepartment of Systems Pharmacology Medical Informatics, University of Wisconsin—Madison, Madison, Wisconsin, USA iMorgridge Institute for Research, Madison, Wisconsin, USA jChildhood Cancer Data Lab, Alex’s Lemonade Stand Foundation, Philadelphia, Pennsylvania, USA, , Vikas Bansal, John P. Barton, Simina M. Boca, Joel D. Boerckel, Christian Brueffer, James Brian Byrd, Stephen Capone, Shikta Das, Anna Ada Dattoli, John J. Dziak, Jeffrey M. Field, Soumita Ghosh, Anthony Gitter, Rishi Raj Goel, Casey S. Greene, Marouen Ben Guebila, Daniel S. Himmelstein, Fengling Hu, Nafisa M. Jadavji, Jeremy P. Kamil, Sergey Knyazev, Likhitha Kolla, Alexandra J. Lee, Ronan Lordan, Tiago Lubiana, Temitayo Lukan, Adam L. MacLean, David Mai, Serghei Mangul, David Manheim, Lucy D’Agostino McGowan, Jesse G. Meyer, Ariel I. Mundo, Amruta Naik, YoSon Park, Dimitri Perrin, Yanjun Qi, Diane N. Rafizadeh, Bharath Ramsundar, Halie M. Rando, Sandipan Ray, Michael P. Robson, Vincent Rubinetti, Elizabeth Sell, Lamonica Shinholster, Ashwin N. Skelly, Yuchen Sun, Yusha Sun, Gregory L. Szeto, Ryan Velazquez, Jinhui Wang, Nils Wellhausen, Jack A. Gilbert
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-02T08:00:00Z
DOI: 10.1128/msystems.00927-22
- The Coming of Age of Nucleic Acid Vaccines during COVID-19
Authors: Halie M. Rando; Ronan Lordan, Likhitha Kolla, Elizabeth Sell, Alexandra J. Lee, Nils Wellhausen, Amruta Naik, Jeremy P. Kamil, , Anthony Gitter, Casey S. Greene aDepartment of Systems Pharmacology Medical Informatics, University of Wisconsin—Madison, Madison, Wisconsin, USA kMorgridge Institute for Research, Madison, Wisconsin, USA lChildhood Cancer Data Lab, Alex’s Lemonade Stand Foundation, Philadelphia, Pennsylvania, USA, John P. Barton, Simina M. Boca, Joel D. Boerckel, Christian Brueffer, James Brian Byrd, Stephen Capone, Shikta Capone, Anna Ada Dattoli, John J. Dziak, Jeffrey M. Field, Soumita Ghosh, Anthony Gitter, Rishi Raj Goel, Casey S. Greene, Marouen Ben Guebila, Daniel S. Himmelstein, Fengling Hu, Nafisa M. Jadavji, Jeremy P. Kamil, Sergey Knyazev, Likhitha Kolla, Alexandra J. Lee, Ronan Lordan, Tiago Lubiana, Temitayo Lukan, Adam L. MacLean, David Mai, Serghei Mangul, David Manheim, Lucy D’Agostino McGowan, Jesse G. Meyer, Ariel I. Mundo, Amruta Naik, YoSon Park, Dimitri Perrin, Yanjun Qi, Diane N. Rafizadeh, Bharath Ramsundar, Halie M. Rando, Sandipan Ray, Michael P. Robson, Vincent Rubinetti, Elizabeth Sell, Lamonica Shinholster, Ashwin N. Skelly, Yuchen Sun, Yusha Sun, Gregory L. Szeto, Ryan Velazquez, Jinhui Wang, Nils Wellhausen, , Jack A. Gilbert
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-03-02T08:00:00Z
DOI: 10.1128/msystems.00928-22
- Alterations in the Gut Microbiota in Pregnant Women with Pregestational
Type 2 Diabetes Mellitus
Authors: Yuan Ren; Lilan Hao, Juntao Liu, Pei Wang, Qiuxia Ding, Chen Chen, Yingna Song aDepartment of Obstetrics Gynecology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China bNational Clinical Research Center for Obstetric & Gynecologic Diseases, Beijing, China cBGI-Shenzhen, Shenzhen, China, Emily K. Cope
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-28T08:00:00Z
DOI: 10.1128/msystems.01146-22
- A Genome-Scale Metabolic Model of Marine Heterotroph Vibrio splendidus
Strain 1A01
Authors: Arion Iffland-Stettner; Hiroyuki Okano, Matti Gralka, Ghita Guessous, Kapil Amarnath, Otto X. Cordero, Terence Hwa, Sebastian Bonhoeffer aInstitute of Integrative Biology, ETH Zurich, Zurich, Switzerland bDepartment of Physics, University of California at San Diego, La Jolla, California, USA cDepartment of Civil Environmental Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, USA, Steven J. Hallam
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-28T08:00:00Z
DOI: 10.1128/msystems.00377-22
- From the Sunlit to the Aphotic Zone: Assembly Mechanisms and Co-Occurrence
Patterns of Protistan-Bacterial Microbiotas in the Western Pacific Ocean
Authors: Ping Sun; Ying Wang, Yifan Zhang, Ramiro Logares, Peng Cheng, Dapeng Xu, Bangqin Huang aState Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China bKey Laboratory of the Ministry of Education for Coastal Earth Sciences, Xiamen University, Xiamen, China, Laetitia G. E. Wilkins
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-27T08:00:00Z
DOI: 10.1128/msystems.00013-23
- Metabolic Robustness to Growth Temperature of a Cold- Adapted Marine
Bacterium
Authors: Christopher Riccardi; Marzia Calvanese, Veronica Ghini, Tania Alonso-Vásquez, Elena Perrin, Paola Turano, Giorgio Giurato, Alessandro Weisz, Ermenegilda Parrilli, Maria Luisa Tutino, Marco Fondi aDepartment of Biology, University of Florence, Florence, Italy bDipartimento di Scienze Chimiche, University of Naples, Napoli, Italy cCenter of Magnetic Resonance (CERM), University of Florence, Florence, Italy dConsorzio Interuniversitario Risonanze Magnetiche di Metallo Proteine (CIRMMP), Florence, Italy eDepartment of Medicine, Surgery Dentistry ‘Scuola Medica Salernitana’, University of Salerno, Baronissi, Italy fGenome Research Center for Health - GRGS, Baronissi, Italy gCentro interdipartimentale per lo Studio delle Dinamiche Complesse (CSDC), University of Florence, Italy, Rachel Mackelprang
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-27T08:00:00Z
DOI: 10.1128/msystems.01124-22
- A Schema for Digitized Surface Swab Site Metadata in Open-Source DNA
Sequence Databases
Authors: Jingzhang Feng; Devin Daeschel, Damion Dooley, Emma Griffiths, Marc Allard, Ruth Timme, Yi Chen, Abigail B. Snyder aDepartment of Food Science, Cornell University, Ithaca, New York, USA bCentre for Infectious Disease Genomics Drug Administration, College Park, Maryland, USA, Jack A. Gilbert
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-27T08:00:00Z
DOI: 10.1128/msystems.01284-22
- Host Hybridization Dominates over Cohabitation in Affecting Gut Microbiota
of Intrageneric Hybrid Takifugu Pufferfish
Authors: Xingkun Jin; Haoyong Zhu, Yan Shi, Ziwei Chen, Yaohui Wang, Jian-Fang Gui, Zhe Zhao aJiangsu Province Engineering Research Center for Marine Bio-resources Sustainable Utilization, College of Oceanography, Hohai University, Nanjing, China bState Key Laboratory of Freshwater Ecology Biotechnology, Institute of Hydrobiology, The Innovation Academy of Seed Design, Chinese Academy of Sciences, Wuhan, China cJiangsu Zhongyang Group Co., Ltd., Nantong, China, Kathryn C. Milligan-McClellan
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-23T08:00:00Z
DOI: 10.1128/msystems.01181-22
- Interactions between Culturable Bacteria Are Predicted by Individual
Species’ Growth
Authors: Einat Nestor; Gal Toledano, Jonathan Friedman aThe Rachel Engineering, Hebrew University, Jerusalem, Israel bInstitute of Environmental Sciences, Hebrew University, Rehovot, Israel, Kiran Patil
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-23T08:00:00Z
DOI: 10.1128/msystems.00836-22
- Spatiotemporal Dynamics of Coastal Viral Community Structure and Potential
Biogeochemical Roles Affected by an Ulva prolifera Green Tide
Authors: Meiaoxue Han; Jianhua Sun, Qingwei Yang, Yantao Liang, Yong Jiang, Chen Gao, Chengxiang Gu, Qian Liu, Xuechao Chen, Gang Liu, Hongbing Shao, Cui Guo, Hui He, Hualong Wang, Yeong Yik Sung, Wen Jye Mok, Li Lian Wong, Zongling Wang, Andrew McMinn, Min Wang aCollege of Marine Life Sciences, Key Lab of Polar Oceanography Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia fHaide College, Ocean University of China, Qingdao, China gAffiliated Hospital of Qingdao University, Qingdao, China, Jeffrey Lawrence Blanchard
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-23T08:00:00Z
DOI: 10.1128/msystems.01211-22
- Consistent Stool Metagenomic Biomarkers Associated with the Response To
Melanoma Immunotherapy
Authors: Evgenii I. Olekhnovich; Artem B. Ivanov, Anna A. Babkina, Arseniy A. Sokolov, Vladimir I. Ulyantsev, Dmitry E. Fedorov, Elena N. Ilina aLopukhin Federal Research Technology, Moscow, Russian Federation, Chaysavanh Manichanh
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-21T08:00:00Z
DOI: 10.1128/msystems.01023-22
- Construction and Modeling of a Coculture Microplate for Real-Time
Measurement of Microbial Interactions
Authors: Charles Jo; David B. Bernstein, Natalie Vaisman, Horacio M. Frydman, Daniel Segrè aDepartment of Biomedical Engineering, Boston University, Boston, Massachusetts, USA bBiological Design Center, Boston University, Boston, Massachusetts, USA cDepartment of Biology, Boston University, Boston, Massachusetts, USA dCAPES Foundation, Ministry of Education of Brazil, Brasília, Brazil eProgram in Bioinformatics, Boston University, Boston, Massachusetts, USA fDepartment of Physics, Boston University, Boston, Massachusetts, USA, Xiaoxia Lin
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-21T08:00:00Z
DOI: 10.1128/msystems.00017-21
- Cell-Cell Signaling Proteobacterial LuxR Solos: a Treasure Trove of
Subgroups Having Different Origins, Ligands, and Ecological Roles
Authors: Cristina Bez; Alexander Martin Geller, Asaf Levy, Vittorio Venturi aInternational Centre for Genetic Engineering Environment, The Hebrew University of Jerusalem, Rehovot, Israel, Jack A. Gilbert, Leo Eberl; Michael Savka
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-21T08:00:00Z
DOI: 10.1128/msystems.01039-22
- Pseudomonas aeruginosa Nonphosphorylated AlgR Induces Ribonucleotide
Reductase Expression under Oxidative Stress Infectious Conditions
Authors: Alba Rubio-Canalejas; Joana Admella, Lucas Pedraz, Eduard Torrents aBacterial Infections Statistics, Faculty of Biology, University of Barcelona, Barcelona, Spain, Laura A. Hug
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-16T08:00:00Z
DOI: 10.1128/msystems.01005-22
- Giant Virus Infection Signatures Are Modulated by Euphotic Zone Depth
Strata and Iron Regimes of the Subantarctic Southern Ocean
Authors: Naomi E. Gilbert; Gary R. LeCleir, Helena L. Pound, Robert F. Strzepek, Michael J. Ellwood, Benjamin S. Twining, Simon Roux, Philip W. Boyd, Steven W. Wilhelm aDepartment of Microbiology, University of Tennessee, Knoxville, Tennessee, USA bInstitute for Marine Antarctic Studies, University of Tasmania, Hobart, Tasmania, Australia cResearch School of Earth Sciences, Australian National University, Canberra, Australian Capital Territory, Australia dBigelow Laboratory for Ocean Sciences, East Boothbay, Maine, USA eDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, California, USA, Thulani P. Makhalanyane
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-16T08:00:00Z
DOI: 10.1128/msystems.01260-22
- A Novel Synbiotic Alleviates Autoimmune Hepatitis by Modulating the Gut
Microbiota-Liver Axis and Inhibiting the Hepatic TLR4/NF-κB/NLRP3
Signaling Pathway
Authors: Yongbo Kang; Xiaoyu Kuang, Huan Yan, Peng Ren, Xiaodan Yang, Haixia Liu, Qingqing Liu, Hao Yang, Xing Kang, Xiaorong Shen, Mingwei Tong, Lin Li, Xiaohui Wang, Linzhi Guo, Jieqiong Ma, Fan Zhang, Weiping Fan aDepartment of Microbiology Immunology, School of Basic Medical Sciences, Shanxi Medical University, Taiyuan, Shanxi, China bLaboratory of Morphology, Shanxi Medical University, Taiyuan, Shanxi, China, Chaysavanh Manichanh
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-16T08:00:00Z
DOI: 10.1128/msystems.01127-22
- Kelp Culture Enhances Coastal Biogeochemical Cycles by Maintaining
Bacterioplankton Richness and Regulating Its Interactions
Authors: Yi Sun; Hongjun Li, Xiaocheng Wang, Hongbo Li, Ye Deng aState Environmental Protection Key Laboratory of Coastal Ecosystem, National Marine Environmental Monitoring Center, Dalian, China bCollege of Resources Environment, University of Chinese Academy of Sciences, Beijing, China, Laetitia G. E. Wilkins
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-16T08:00:00Z
DOI: 10.1128/msystems.00002-23
- Transcriptomics-Driven Characterization of LUZ100, a T7-like Pseudomonas
Phage with Temperate Features
Authors: Leena Putzeys; Jorien Poppeliers, Maarten Boon, Cédric Lood, Marta Vallino, Rob Lavigne aLaboratory of Gene Technology, Department of Biosystems, KU Leuven, Leuven, Belgium bInstitute for Sustainable Plant Protection, CNR, Turin, Italy, Ákos T. Kovács
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-16T08:00:00Z
DOI: 10.1128/msystems.01189-22
- Natural Green Spaces, Sensitization to Allergens, and the Role of Gut
Microbiota during Infancy
Authors: Vienna Buchholz; Sarah L. Bridgman, Charlene C. Nielsen, Mireia Gascon, Hein M. Tun, Elinor Simons, Stuart E. Turvey, Padmaja Subbarao, Tim K. Takaro, Jeffrey R. Brook, James A. Scott, Piush J. Mandhane, Anita L. Kozyrskyj aDepartment of Pediatrics, University of Alberta, Edmonton, Alberta, Canada bBarcelona Institute for Global Health (ISGlobal), Barcelona Biomedical Research Park (PRBB), Barcelona, Spain cCIBER Epidemiología y Salud Pública (CIBERESP), Madrid, Spain dThe Jockey Club School of Public Health Physiology, Hospital for Sick Children, University of Toronto, Toronto, Ontario, Canada iFaculty of Health Sciences, Simon Fraser University, Burnaby, British Columbia, Canada jDalla Lana School of Public Health, University of Toronto, Toronto, Ontario, Canada kUniversitat Pompeu Fabra (UPF), Barcelona, Spain, Suzanne Lynn Ishaq, Jenni Lehtimaki
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-15T08:00:00Z
DOI: 10.1128/msystems.01190-22
- Characterization of a Marine Diatom Chitin Synthase Using a Combination of
Meta-Omics, Genomics, and Heterologous Expression Approaches
Authors: Zhanru Shao; Osei Ampomah, Fabio Rocha Jimenez Vieira, Richard G. Dorrell, Shaoxuan Li, Leila Tirichine, Vincent Bulone, Delin Duan, Chris Bowler aCAS Wine, University of Adelaide, Urrbrae, South Australia, Australia, Paul Wilmes, Susheel Busi
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-15T08:00:00Z
DOI: 10.1128/msystems.01131-22
- Small Spatial Scale Drivers of Secondary Metabolite Biosynthetic Diversity
in Environmental Microbiomes
Authors: Aileen Ute Geers; Mikael Lenz Strube, Mikkel Bentzon-Tilia aDepartment of Biotechnology Biomedicine, Technical University of Denmark, Lyngby, Denmark, Monica T. Pupo
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-15T08:00:00Z
DOI: 10.1128/msystems.00724-22
- Functional and Compositional Changes in the Fecal Microbiome of a
Shorebird during Migratory Stopover
Authors: Kirsten Grond; Artemis S. Louyakis& Sarah M. Hird aDepartment of Molecular Cell Biology, University of Connecticut, Storrs, Connecticut, USA bInstitute for Systems Genomics, University of Connecticut, Storrs, Connecticut, USA, Suzanne Lynn Ishaq, Brian Trevelline
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-14T08:00:00Z
DOI: 10.1128/msystems.01128-22
- Environmental Selection and Biogeography Shape the Microbiome of
Subsurface Petroleum Reservoirs
Authors: Daniel A. Gittins; Srijak Bhatnagar, Casey R. J. Hubert aDepartment of Biological Sciences, University of Calgary, Calgary, Canada bFaculty of Science Technology, Athabasca University, Athabasca, Canada, Jacqueline Goordial
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-14T08:00:00Z
DOI: 10.1128/msystems.00884-22
- Host Factors Associated with Gut Mycobiome Structure
Authors: Natalia Szóstak; Luiza Handschuh, Anna Samelak-Czajka, Katarzyna Tomela, Marcin Schmidt, Łukasz Pruss, Kaja Milanowska-Zabel, Piotr Kozlowski, Anna Philips aInstitute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, Poland bInstitute of Computing Science, Poznan University of Technology, Poznan, Poland cDepartment of Cancer Immunology, Chair of Medical Biotechnology, Poznan University of Medical Sciences, Poznan, Poland dDepartment of Food Biotechnology Technology, Wroclaw, Poland, Naseer Sangwan
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-14T08:00:00Z
DOI: 10.1128/msystems.00986-22
- Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent
Pseudomonas veronii 1YdBTEX2
Authors: Marian Morales; Vladimir Sentchilo, Nicolas Carraro, Senka Causevic, Dominique Vuarambon, Jan R. van der Meer aDepartment of Fundamental Microbiology, University of Lausanne, Lausanne, Switzerland, Laura A. Hug, Trevor Charles
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-14T08:00:00Z
DOI: 10.1128/msystems.01174-22
- Transcriptome Dynamics of Pseudomonas aeruginosa during Transition from
Overlapping To Non-Overlapping Cell Cycles
Authors: Kathrin Alpers; Elisabeth Vatareck, Lothar Gröbe, Mathias Müsken, Maren Scharfe, Susanne Häussler, Jürgen Tomasch aDepartment of Molecular Bacteriology, Helmholtz Centre for Infection Research, Braunschweig, Germany bPlatform Flow Cytometry Experimental Infection Research, Hannover, Germany fDepartment of Clinical Microbiology, Copenhagen University Hospital – Rigshospitalet, Copenhagen, Denmark gCluster of Excellence RESIST (EXC 2155), Hannover Medical School, Hannover, Germany hInstitute of Microbiology of the Czech Academy of Science, Center Algatech, Třeboň, Czech Republic, Oleg A. Igoshin
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-14T08:00:00Z
DOI: 10.1128/msystems.01130-22
- The Slowdown of Growth Rate Controls the Single-Cell Distribution of
Biofilm Matrix Production via an SinI-SinR-SlrR Network
Authors: Zhuo Chen; Brenda Zarazúa-Osorio, Priyanka Srivastava, Masaya Fujita, Oleg A. Igoshin aSystems, Synthetic Biochemistry, University of Houston, Houston, Texas, USA cDepartment of Bioengineering, Rice University, Houston, Texas, USA dDepartment of Chemistry, Rice University, Houston, Texas, USA eDepartment of Biosciences, Rice University, Houston, Texas, USA fCenter for Theoretical Biological Physics, Rice University, Houston, Texas, USA, Ákos T. Kovács
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-14T08:00:00Z
DOI: 10.1128/msystems.00622-22
- Global Transcriptional Response of Escherichia coli Exposed In Situ to
Different Low-Dose Ionizing Radiation Sources
Authors: Molly Wintenberg; Lisa Manglass, Nicole E. Martinez, Mark Blenner aDepartment of Chemical Biomolecular Engineering, University of Delaware, Newark, Delaware, USA, Steven J. Hallam
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-13T08:00:00Z
DOI: 10.1128/msystems.00718-22
- Interaction between Microbes and Host in Sow Vaginas in Early Pregnancy
Authors: Xupeng Zang; Wenjing Wang, Shengchen Gu, Ting Gu, Huaqiang Yang, Enqin Zheng, Zheng Xu, Sixiu Huang, Zicong Li, Gengyuan Cai, Linjun Hong, Zhenfang Wu aNational Engineering Research Center for Breeding Swine Industry, College of Animal Science, South China Agricultural University, Guangzhou, China bGuangdong Provincial Key Laboratory of Agro-Animal Genomics Utilization of Subtropical Agro-bioresources, Guangzhou, China, Suzanne Lynn Ishaq
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-07T08:00:00Z
DOI: 10.1128/msystems.01192-22
- A Genomic Survey of the Natural Product Biosynthetic Potential of
Actinomycetes Isolated from New Zealand Lichens
Authors: Peng Hou; Vincent V. Nowak, Chanel J. Taylor, Mark J. Calcott, Allison Knight, Jeremy G. Owen aSchool of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand bCentre for Biodiscovery, Victoria University of Wellington, Wellington, New Zealand cMaurice Wilkins Centre for Molecular Biodiscovery, Auckland, New Zealand dDepartment of Botany, Otago University, Dunedin, New Zealand, Matthew F. Traxler
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-07T08:00:00Z
DOI: 10.1128/msystems.01030-22
- Erratum for Proctor et al., “Resources To Facilitate Use of the Altered
Schaedler Flora (ASF) Mouse Model To Study Microbiome Function”
Authors: Alexandra Proctor; Shadi Parvinroo, Tanner Richie, Xinglin Jia, Sonny T. M. Lee, Peter D. Karp, Suzanne Paley, Aleksandar D. Kostic, Joseph F. Pierre, Michael J. Wannemuehler, Gregory J. Phillips
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-07T08:00:00Z
DOI: 10.1128/msystems.01205-22
- Comparative Analysis of Core Microbiome Assignments: Implications for
Ecological Synthesis
Authors: Gordon F. Custer; Maya Gans, Linda T. A. van Diepen, Francisco Dini-Andreote, C. Alex Buerkle aDepartment of Ecosystem Science Management, University of Wyoming, Laramie, Wyoming, USA bDepartment of Plant Science, Pennsylvania State University, University Park, Pennsylvania, USA cHuck Institutes of Life Sciences, Pennsylvania State University, University Park, Pennsylvania, USA dProgram in Ecology, University of Wyoming, Laramie, Wyoming, USA eDepartment of Botany, University of Wyoming, Laramie, Wyoming, USA, Ashley Shade, Adriana Torres-Ballesteros
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-06T08:00:00Z
DOI: 10.1128/msystems.01066-22
- CrAssphage May Be Viable Markers of Contamination in Pristine and
Contaminated River Water
Authors: Nyasha Mafumo; Oliver K. I. Bezuidt, Wouter le Roux, Thulani P. Makhalanyane aDSI/NRF SARChI in Marine Microbiomics, Department of Biochemistry, Genetics Microbiology, University of Pretoria, Pretoria, South Africa bWater-Related Microbiology Laboratory, Water Centre, Pretoria, South Africa, Hans C. Bernstein
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-06T08:00:00Z
DOI: 10.1128/msystems.01282-22
- Erratum for Shu et al., “Transcriptomic-Guided Phosphonate Utilization
Analysis Unveils Evidence of Clathrin-Mediated Endocytosis and
Phospholipid Synthesis in the Model Diatom, Phaeodactylum tricornutum”
Authors: Huilin Shu; Yanchun You, Hongwei Wang, Jingtian Wang, Ling Li, Jian Ma, Xin Lin
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-06T08:00:00Z
DOI: 10.1128/msystems.01294-22
- Prevalence of Viral Frequency-Dependent Infection in Coastal Marine
Prokaryotes Revealed Using Monthly Time Series Virome Analysis
Authors: Kento Tominaga; Nana Ogawa-Haruki, Yosuke Nishimura, Hiroyasu Watai, Keigo Yamamoto, Hiroyuki Ogata, Takashi Yoshida aGraduate School of Agriculture, Kyoto University, Kyoto, Japan bGraduate School of Frontier Sciences, The University of Tokyo, Tokyo, Japan cJapan Agency for Marine-Earth Science Fisheries, Osaka Prefecture, Osaka, Japan eInstitute for Chemical Research, Kyoto University, Kyoto, Japan, Michael S. Rappe
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-01T08:00:00Z
DOI: 10.1128/msystems.00931-22
- Evolutionary Responses to Acquiring a Multidrug Resistance Plasmid Are
Authors: Laura Carrilero; Steven J. Dunn, Robert A. Moran, Alan McNally, Michael A. Brockhurst aDivision of Evolution, Infection Dental Science, University of Birmingham, Birmingham, United Kingdom, Alejandra Rodríguez-Verdugo
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-01T08:00:00Z
DOI: 10.1128/msystems.00713-22
- The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin
Authors: Alexey V. Melnik; Chris Callewaert, Kathleen Dorrestein, Rosie Broadhead, Jeremiah J. Minich, Madeleine Ernst, Greg Humphrey, Gail Ackermann, Rob Gathercole, Alexander A. Aksenov, Rob Knight, Pieter C. Dorrestein aCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy Cellular Biology Laboratory, The Salk Institute for Biological Studies, La Jolla, California, USA lSection for Clinical Mass Spectrometry, Danish Center for Neonatal Screening, Department of Congenital Disorders, Statens Serum Institut, Copenhagen, Denmark, Carla Porto, Rita de Cassia Pessotti; Celio Figueiredo Angolini
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-02-01T08:00:00Z
DOI: 10.1128/msystems.00922-22
- Charting the Lipopeptidome of Nonpathogenic Pseudomonas
Authors: Catherine Cesa-Luna; Niels Geudens, Léa Girard, Vic De Roo, Hassan R. Maklad, José C. Martins, Monica Höfte, René De Mot aCentre of Microbial Crops, Faculty of Bioscience Engineering, Ghent University, Ghent, Belgium, Aurélie Deveau
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-31T08:00:00Z
DOI: 10.1128/msystems.00988-22
- Strong Dispersal Limitation of Microbial Communities at Shackleton
Glacier, Antarctica
Authors: Nathan P. Lemoine; Byron J. Adams, Melisa Diaz, Nicholas B. Dragone, André L. C. Franco, Noah Fierer, W. Berry Lyons, Ian D. Hogg, Diana H. Wall aDepartment of Biological Sciences, Marquette University, Milwaukee, Wisconsin, USA bDepartment of Zoology, Milwaukee Public Museum, Milwaukee, Wisconsin, USA cDepartment of Biology, Evolutionary Ecology Laboratories, Monte L. Bean Museum, Brigham Young University, Provo, Utah, USA dSchool of Earth Sciences, Byrd Polar Evolutionary Biology, Cooperative Institute for Research in Environmental Sciences, University of Colorado at Boulder, Boulder, Colorado, USA fDepartment of Biology, Colorado State University, Fort Collins, Colorado, USA gCanadian High Arctic Research Station, Polar Knowledge Canada, Cambridge Bay, Nunavut, Canada hSchool of Science, University of Waikato, Hamilton, New Zealand iSchool of Global Environmental Sustainability, Colorado State University, Fort Collins, Colorado, USA, Miguel Lurgi
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-31T08:00:00Z
DOI: 10.1128/msystems.01254-22
- A High Dose of Dietary Berberine Improves Gut Wall Morphology, Despite an
Expansion of Enterobacteriaceae and a Reduction in Beneficial Microbiota
in Broiler Chickens
Authors: Tessa Dehau; Marc Cherlet, Siska Croubels, Filip van Immerseel, Evy Goossens aLivestock Gut Health Team (LiGHT) Ghent, Department of Pathobiology, Pharmacology Zoological Medicine, Faculty of Veterinary Medicine, Ghent University, Merelbeke, Belgium, Kathryn C. Milligan-McClellan
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-31T08:00:00Z
DOI: 10.1128/msystems.01239-22
- Indigenous Knowledge and the Microbiome—Bridging the Disconnect between
Colonized Places, Peoples, and the Unseen Influences That Shape Our Health
and Well-Being
Authors: Isaac Warbrick; Deborah Heke, Martin Breed aTaupua Waiora Centre for Māori Health Research–Auckland University of Technology, Auckland, New Zealand bCollege of Science Engineering–Flinders University, Adelaide, Australia, Suzanne Lynn Ishaq
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-25T08:00:00Z
DOI: 10.1128/msystems.00875-22
- Adjunctive Probio-X Treatment Enhances the Therapeutic Effect of a
Conventional Drug in Managing Type 2 Diabetes Mellitus by Promoting
Short-Chain Fatty Acid-Producing Bacteria and Bile Acid Pathways
Authors: Ye Chen; Xin Shen, Teng Ma, Xia Yu, Lai-Yu Kwok, Yalin Li, Zhihong Sun, Dongmei Li, Heping Zhang aInner Mongolia People’s Hospital, Hohhot, Inner Mongolia, China bInner Mongolia Key Laboratory of Dairy Biotechnology Engineering, Ministry of Education, Inner Mongolia Agricultural University, Hohhot, Inner Mongolia, China, Jack A. Gilbert
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-23T08:00:00Z
DOI: 10.1128/msystems.01300-22
- Exploring the Potential Molecular Mechanisms of Interactions between a
Probiotic Consortium and Its Coral Host
Authors: Phillipe M. Rosado; Pedro M. Cardoso, João G. Rosado, Júnia Schultz, Ulisses Nunes da Rocha, Tina Keller-Costa, Raquel S. Peixoto aRed Sea Research Centre, King Abdullah University of Science Bioeconomy, Instituto Superior Técnico, Lisbon, Portugal, Thulani P. Makhalanyane
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-23T08:00:00Z
DOI: 10.1128/msystems.00921-22
- Multifactorial Microvariability of the Italian Raw Milk Cheese Microbiota
and Implication for Current Regulatory Scheme
Authors: Federico Fontana; Giulia Longhi, Giulia Alessandri, Gabriele Andrea Lugli, Leonardo Mancabelli, Chiara Tarracchini, Alice Viappiani, Rosaria Anzalone, Marco Ventura, Francesca Turroni, Christian Milani aLaboratory of Probiogenomics, Department of Chemistry, Life Sciences, Environmental Sustainability, University of Parma, Parma, Italy bGenProbio srl, Parma, Italy cMicrobiome Research Hub, University of Parma, Parma, Italy, Paul D. Cotter
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-23T08:00:00Z
DOI: 10.1128/msystems.01068-22
- Ecological Drivers of Community Cohesion
Authors: Chaitanya S. Gokhale; Mariana Velasque, Jai A. Denton aResearch Group for Theoretical Models of Eco-evolutionary Dynamics, Department of Evolutionary Theory, Max Planck Institute for Evolutionary Biology, Plön, Germany bGenomics Technology, Onna-son, Japan cExperimental Evolutionary Biology Lab, Monash University, Clayton, Australia dWorld Mosquito Program, Institute of Vector-borne Disease, Monash University, Clayton, Australia, Babak Momeni
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-19T08:00:00Z
DOI: 10.1128/msystems.00929-22
- Predicting the Next Superspreader
Authors: Alfredo Chavez-Arroyo; Andreas J. Bäumler aDepartment of Medical Microbiology Immunology, School of Medicine, University of California at Davis, Davis, California, USA
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-19T08:00:00Z
DOI: 10.1128/msystems.01199-22
- Recognizing the Contribution of Data: The Use of Companion Articles To
Highlight Novel Resources in Microbiology Research
Authors: Jack A. Gilbert; Irene L. G. Newton, Gemma Reguera aUniversity of California, San Diego School of Medicine, La Jolla, California, USA bDepartment of Biology, Indiana University, Bloomington, Indiana, USA cDepartment of Microbiology Molecular Genetics, Michigan State University, East Lansing, Michigan, USA
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-19T08:00:00Z
DOI: 10.1128/msystems.01271-22
- Inhibition of Ribosome Assembly and Ribosome Translation Has Distinctly
Different Effects on Abundance and Paralogue Composition of Ribosomal
Protein mRNAs in Saccharomyces cerevisiae
Authors: Md Shamsuzzaman; Nusrat Rahman, Brian Gregory, Ananth Bommakanti, Janice M. Zengel, Vincent M. Bruno, Lasse Lindahl aDepartment of Biological Sciences, University of Maryland—Baltimore County, Baltimore, Maryland, USA bInstitute for Genome Sciences, Baltimore, Maryland, USA, Matthew F. Traxler, Sunil Laxman
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-18T08:00:00Z
DOI: 10.1128/msystems.01098-22
- What Lies Beneath' Taking the Plunge into the Murky Waters of Phage
Biology
Authors: Mirjam Zünd; Sage J. B. Dunham, Jason A. Rothman, Katrine L. Whiteson aDepartment of Molecular Biology Biochemistry, University of California, Irvine, California, USA, Jack A. Gilbert, Scott Jackson
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-18T08:00:00Z
DOI: 10.1128/msystems.00807-22
- Inflammatory Responses Induced by the Monophasic Variant of Salmonella
Typhimurium in Pigs Play a Role in the High Shedder Phenotype and Fecal
Microbiota Composition
Authors: Florent Kempf; Guido Cordoni, Anne-Marie Chaussé, Rosanna Drumo, Helen Brown, Daniel L. Horton, Frédéric Paboeuf, Martine Denis, Philippe Velge, Roberto La Ragione, Annaëlle Kerouanton aISP, INRAE, Université François Rabelais de Tours, Nouzilly, France bDepartment of Pathology Medicine, Guildford, Surrey, UK, Kim E. Barrett
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-11T08:00:00Z
DOI: 10.1128/msystems.00852-22
- Viral Community Structure and Potential Functions in the Dried-Out Aral
Sea Basin Change along a Desiccation Gradient
Authors: Wisnu Adi Wicaksono; Dilfuza Egamberdieva, Tomislav Cernava, Gabriele Berg aInstitute of Environmental Biotechnology, Graz University of Technology, Graz, Austria bInstitute of Fundamental Biology, University of Potsdam, Potsdam, Germany, Jack A. Gilbert
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-10T08:00:00Z
DOI: 10.1128/msystems.00994-22
- Phylogenetic Conservation of Soil Microbial Responses to Elevated
Tropospheric Ozone and Nitrogen Fertilization
Authors: Zhengsheng Yu; Qun Gao, Xue Guo, Jinlong Peng, Qi Qi, Xunwen Chen, Mengying Gao, Cehui Mo, Zhaozhong Feng, Ming Hung Wong, Yunfeng Yang, Hui Li aGuangdong Provincial Research Centre for Environment Pollution Control Technology, Nanjing, China, Laura A. Hug
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-10T08:00:00Z
DOI: 10.1128/msystems.00721-22
- Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic
Catalog and Guides an In Vitro Model for Cheese Communities
Authors: Christina C. Saak; Emily C. Pierce, Cong B. Dinh, Daniel Portik, Richard Hall, Meredith Ashby, Rachel J. Dutton aDivision of Biological Sciences, Section of Molecular Biology, University of California San Diego, La Jolla, California, USA bPacific Biosciences, Menlo Park, California, USA, Paul D. Cotter, Davide Porcellato
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-09T08:00:00Z
DOI: 10.1128/msystems.00701-22
- Genomic and Transcriptomic Insights into Salinity Tolerance-Based Niche
Differentiation of Synechococcus Clades in Estuarine and Coastal Waters
Authors: Xiaomin Xia; Ying Liao, Jiaxing Liu, Sze Ki Leung, Pui Yin Lee, Lingshuai Zhang, Yehui Tan, Hongbin Liu aKey Laboratory of Tropical Marine Bio-resources Technology, Hong Kong, China, E. Maggie Sogin
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-09T08:00:00Z
DOI: 10.1128/msystems.01106-22
- Blue Light Sensing BlsA-Mediated Modulation of Meropenem Resistance and
Biofilm Formation in Acinetobacter baumannii
Authors: Jihye Yang; Sohyeon Yun, Woojun Park aLaboratory of Molecular Environmental Microbiology, Department of Environmental Science Ecological Engineering, Korea University, Seoul, Republic of Korea, Mark J. Mandel
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-09T08:00:00Z
DOI: 10.1128/msystems.00897-22
- Dynamics of Microbial Community and Potential Microbial Pollutants in
Shopping Malls
Authors: Xin-Li An; Jian-Xin Xu, Mei-Rong Xu, Cai-Xia Zhao, Hu Li, Yong-Guan Zhu, Jian-Qiang Su aKey Laboratory of Urban Environment Forestry University, Fuzhou, China, Emily B. Graham
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-05T08:00:00Z
DOI: 10.1128/msystems.00576-22
- Unique Features of the Gut Microbiome Characterized in Animal Models of
Angelman Syndrome
Authors: Ulrika Beitnere; Brayan Vilanova-Cuevas, Sarah G. Christian, Clint Taylor, Elizabeth L. Berg, Nycole A. Copping, Scott V. Dindot, Jill L. Silverman, Mélanie G. Gareau, David J. Segal aGenome Center, University of California Davis, Davis, California, USA bDepartment of Anatomy, Physiology Molecular Medicine, University of California Davis, Davis, California, USA, John F. Rawls
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-04T08:00:00Z
DOI: 10.1128/msystems.00608-22
- Mycobacterium tuberculosis Requires the Outer Membrane Lipid Phthiocerol
Dimycocerosate for Starvation-Induced Antibiotic Tolerance
Authors: Alisha M. Block; Sarah B. Namugenyi, Nagendra P. Palani, Alyssa M. Brokaw, Leanne Zhang, Kenneth B. Beckman, Anna D. Tischler aDepartment of Microbiology Immunology, University of Minnesota, Minneapolis, Minnesota, USA bUniversity of Minnesota Genomics Center, University of Minnesota, Minneapolis, Minnesota, USA, Christopher W. Marshall
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-04T08:00:00Z
DOI: 10.1128/msystems.00699-22
- Investigating the Unique Ability of Trichodesmium To Fix Carbon and
Nitrogen Simultaneously Using MiMoSA
Authors: Joseph J. Gardner; Bri-Mathias S. Hodge, Nanette R. Boyle aChemical Sustainable Energy Institute, University of Colorado, Boulder, Colorado, USA, Julie A. Huber, Rajib Saha
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2023-01-04T08:00:00Z
DOI: 10.1128/msystems.00601-20
- Compendium-Wide Analysis of Pseudomonas aeruginosa Core and Accessory
Genes Reveals Transcriptional Patterns across Strains PAO1 and PA14
Authors: Alexandra J. Lee; Georgia Doing, Samuel L. Neff, Taylor Reiter, Deborah A. Hogan, Casey S. Greene aGenomics Molecular Genetics, University of Colorado School of Medicine, Denver, Colorado, USA, Elizabeth Anne Shank
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-21T08:00:00Z
DOI: 10.1128/msystems.00342-22
- CRISPR-Cas-Guided Mutagenesis of Chromosome and Virulence Plasmid in
Shigella flexneri by Cytosine Base Editing
Authors: Atin Sharma; Ruqiya Omer Aden, Andrea Puhar, David A. Cisneros aDepartment of Molecular Biology, Umeå University, Umeå, Sweden bUmeå Centre for Microbial Research, Umeå University, Umeå, Sweden cThe Laboratory for Molecular Infection Medicine Sweden (MIMS), Umeå University, Umeå, Sweden, Mariana X. Byndloss, François-Xavier Campbell-Valois
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-21T08:00:00Z
DOI: 10.1128/msystems.01045-22
- Computationally Efficient Assembly of Pseudomonas aeruginosa Gene
Expression Compendia
Authors: Georgia Doing; Alexandra J. Lee, Samuel L. Neff, Taylor Reiter, Jacob D. Holt, Bruce A. Stanton, Casey S. Greene, Deborah A. Hogan aDepartment of Microbiology Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA, Jack A. Gilbert
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-21T08:00:00Z
DOI: 10.1128/msystems.00341-22
- Disproportionation of Inorganic Sulfur Compounds by Mesophilic
Chemolithoautotrophic Campylobacterota
Authors: Shasha Wang; Lijing Jiang, Shaobin Xie, Karine Alain, Zhaodi Wang, Jun Wang, Delin Liu, Zongze Shao aKey Laboratory of Marine Genetic Resources, Third Institute of Oceanography, Ministry of Natural Resources of China, Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen, People’s Republic of China bState Key Laboratory Breeding Base of Marine Genetic Resources, Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen, People’s Republic of China cFujian Key Laboratory of Marine Genetic Resources, Sino-French Laboratory of Deep-Sea Microbiology (MicrobSea), Xiamen, People’s Republic of China dSouthern Marine Science Engineering Guangdong Laboratory (Zhuhai), Zhuhai, People’s Republic of China eCNRS, Univ Brest, Ifremer, Unité Biologie et Ecologie des Ecosystèmes Marins Profonds BEEP, UMR 6197, IRP 1211 MicrobSea, IUEM, Plouzané, France, Thulani P. Makhalanyane
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-21T08:00:00Z
DOI: 10.1128/msystems.00954-22
- Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of
Tetracycline Resistance in Escherichia coli
Authors: Mario L. Arrieta-Ortiz; Min Pan, Amardeep Kaur, Evan Pepper-Tunick, Vivek Srinivas, Ananya Dash, Selva Rupa Christinal Immanuel, Aaron N. Brooks, Tyson R. Shepherd, Nitin S. Baliga aInstitute for Systems Biology, Seattle, Washington, USA bMolecular Engineering Sciences Institute, University of Washington, Seattle, Washington, USA cInscripta Inc, Boulder, Colorado, USA dDepartment of Biology, University of Washington, Seattle, Washington, USA eMolecular Cellular Biology Program, University of Washington, Seattle, Washington, USA fLawrence Berkeley National Lab, Berkeley, California, USA gDepartment of Microbiology, University of Washington, Seattle Washington, USA , Pedro H. Oliveira
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-20T08:00:00Z
DOI: 10.1128/msystems.00904-22
- Exploring the Interspecific Interactions and the Metabolome of the Soil
Isolate Hylemonella gracilis
Authors: Olaf Tyc; Purva Kulkarni, Adam Ossowicki, Vittorio Tracanna, Marnix H. Medema, Peter van Baarlen, W. F. J. van IJcken, Koen J. F. Verhoeven, Paolina Garbeva aNetherlands Institute of Ecology (NIOO-KNAW), Department of Microbial Ecology, Wageningen, Netherlands bGoethe University, Department of Internal Medicine I, University Hospital Frankfurt, Frankfurt, Germany cTranslational Metabolic Laboratory, Radboud University Medical Center, Nijmegen, Netherlands dInstitute of Biology, Above–Belowground Interactions Group, Leiden Universitygrid.5132.5, Leiden, Netherlands eWageningen University, Department of Plant Sciences, Bioinformatics Group, Wageningen, Netherlands fUniversity Cologne, Institut für Pflanzenwissenschaften, Cologne, Germany gWageningen University, Department of Animal Sciences, Host-Microbe Interactomics, Wageningen, Netherlands hCenter for Biomics, Erasmus University Medical Center, Rotterdam, Netherlands iNetherlands Institute of Ecology (NIOO-KNAW), Department of Terrestrial Ecology, Wageningen, Netherlands jDepartment of Plant Life Sciences, University of Copenhagen, Copenhagen, Denmark, Aurélie Deveau
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-20T08:00:00Z
DOI: 10.1128/msystems.00574-22
- E. coli Toxin YjjJ (HipH) Is a Ser/Thr Protein Kinase That Impacts Cell
Division, Carbon Metabolism, and Ribosome Assembly
Authors: Fabio Lino Gratani; Till Englert, Payal Nashier, Peter Sass, Laura Czech, Niels Neumann, Sofia Doello, Petra Mann, Rudolf Blobelt, Siegfried Alberti, Karl Forchhammer, Gert Bange, Katharina Höfer, Boris Macek aQuantitative Proteomics, Interfaculty Institute of Cell Biology, University of Tübingen, Tübingen, Germany bMicrobial Bioactive Compounds, Interfaculty Institute for Microbiology Infection Medicine, University of Tübingen, Tübingen, Germany eMax Planck Institute for Terrestrial Microbiology, Marburg, Germany, Aleksandra Nita-Lazar
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-20T08:00:00Z
DOI: 10.1128/msystems.01043-22
- Taxonomic, Genomic, and Functional Variation in the Gut Microbiomes of
Wild Spotted Hyenas Across 2 Decades of Study
Authors: Connie A. Rojas; Kay E. Holekamp, Mariette Viladomat Jasso, Valeria Souza, Jonathan A. Eisen, Kevin R. Theis aEcology, Evolution, Ecology, University of California, Davis, Davis, California, USA, Sarah M. Hird
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-19T08:00:00Z
DOI: 10.1128/msystems.00965-22
- Longitudinal Study of the Effects of Flammulina velutipes Stipe Wastes on
the Cecal Microbiota of Laying Hens
Authors: Jiali Wei; Huanwei Xiao, Yingbo Wei, Ivan Stève Nguepi Tsopmejio, Chang Sun, Haoyuan Wu, Zhouyu Jin, Hui Song aSchool of Life Science, Jilin Agricultural University, Changchun, Jilin, People’s Republic of China bEngineering Research Center of Chinese Ministry of Education for Bioreactor Medicinal Fungi, Changchun, Jilin, People’s Republic of China, Suzanne Lynn Ishaq, Yunhe Xu
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-13T08:00:00Z
DOI: 10.1128/msystems.00835-22
- Deterministic Assembly Processes Strengthen the Effects of β-Diversity on
Community Biomass of Marine Bacterioplankton
Authors: Feng-Hsun Chang; Jinny Wu Yang, Ariana Chih-Hsien Liu, Hsiao-Pei Lu, Gwo-Ching Gong, Fuh-Kwo Shiah, Chih-hao Hsieh aInstitute of Oceanography, National Taiwan University, Taipei, Taiwan bEcology Evolutionary Biology, National Taiwan University, Taipei, Taiwan hDepartment of Life Science, National Taiwan University, Taipei, Taiwan iNational Center for Theoretical Sciences, Taipei, Taiwan, Michaeline B. N. Albright
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-13T08:00:00Z
DOI: 10.1128/msystems.00970-22
- Increased Proportion of Fiber-Degrading Microbes and Enhanced Cecum
Development Jointly Promote Host To Digest Appropriate High-Fiber Diets
Authors: Guang Pu; Liming Hou, Taoran Du, Wuduo Zhou, Chenxi Liu, Peipei Niu, Chengwu Wu, Wenbin Bao, Ruihua Huang, Pinghua Li aKey Laboratory of Pig Genetic Resources Evaluation Technology, Yangzhou University, Yangzhou, China, Sergio Baranzini
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-13T08:00:00Z
DOI: 10.1128/msystems.00937-22
- Metabolic Network Models of the Gardnerella Pangenome Identify Key
Interactions with the Vaginal Environment
Authors: Lillian R. Dillard; Emma M. Glass, Amanda L. Lewis, Krystal Thomas-White, Jason A. Papin aDepartment of Biochemistry Gynecology, University of California—San Diego, La Jolla, California, USA dEvvy, New York, New York, USA, Vanni Bucci
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-13T08:00:00Z
DOI: 10.1128/msystems.00689-22
- A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis
Agnostic to Viral Variants
Authors: Jack Albright; Eran Mick, Estella Sanchez-Guerrero, Jack Kamm, Anthea Mitchell, Angela M. Detweiler, Norma Neff, Alexandra Tsitsiklis, Paula Hayakawa Serpa, Kalani Ratnasiri, Diane Havlir, Amy Kistler, Joseph L. DeRisi, Angela Oliveira Pisco, Charles R. Langelier aChan Zuckerberg Biohub, San Francisco, California, USA bDivision of Infectious Diseases, Department of Medicine, University of California San Francisco, San Francisco, California, USA cDivision of Pulmonary Global Medicine, Department of Medicine, University of California San Francisco, San Francisco, California, USA, Ileana M. Cristea
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-12T08:00:00Z
DOI: 10.1128/msystems.00671-22
- Diverse Methylmercury (MeHg) Producers and Degraders Inhabit Acid Mine
Drainage Sediments, but Few Taxa Correlate with MeHg Accumulation
Authors: Jin Zheng; Jie-Liang Liang, Pu Jia, Shi-wei Feng, Jing-li Lu, Zhen-hao Luo, Hong-xia Ai, Bin Liao, Jin-tian Li, Wen-sheng Shu aInstitute of Ecological Science, Guangzhou Key Laboratory of Subtropical Biodiversity Biomonitoring, Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou, People’s Republic of China bSchool of Life Sciences, Sun Yat-sen University, Guangzhou, People’s Republic of China, Hans C. Bernstein, Giovanni Gallo
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-12T08:00:00Z
DOI: 10.1128/msystems.00736-22
- Revealing Causes for False-Positive and False-Negative Calling of Gene
Essentiality in Escherichia coli Using Transposon Insertion Sequencing
Authors: Donghui Choe; Uigi Kim, Soonkyu Hwang, Sang Woo Seo, Donghyuk Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho aDepartment of Bioengineering, University of California San Diego, La Jolla, California, USA bDepartment of Biological Sciences Technology, Ulsan, Republic of Korea eDepartment of Pediatrics, University of California San Diego, La Jolla, California, USA, Daniel Garrido
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-12T08:00:00Z
DOI: 10.1128/msystems.00896-22
- Correction for Leclerc et al., “Growth-Dependent Predation and
Generalized Transduction of Antimicrobial Resistance by Bacteriophage”
Authors: Quentin J. Leclerc; Jacob Wildfire, Arya Gupta, Jodi A. Lindsay, Gwenan M. Knight
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-12T08:00:00Z
DOI: 10.1128/msystems.00974-22
- Erratum for Versluis et al., “A Multiscale Spatiotemporal Model
Including a Switch from Aerobic To Anaerobic Metabolism Reproduces
Succession in the Early Infant Gut Microbiota”
Authors: David M. Versluis; Ruud Schoemaker, Ellen Looijesteijn, Daniël Muysken, Prescilla V. Jeurink, Marcel Paques, Jan M. W. Geurts, Roeland M. H. Merks
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-12T08:00:00Z
DOI: 10.1128/msystems.01150-22
- High Level of Interaction between Phages and Bacteria in an Artisanal Raw
Milk Cheese Microbial Community
Authors: Luciano Lopes Queiroz; Gustavo Augusto Lacorte, William Ricardo Isidorio, Mariza Landgraf, Bernadette Dora Gombossy de Melo Franco, Uelinton Manoel Pinto, Christian Hoffmann aMicrobiology Graduate Program, Department of Microbiology, Institute of Biomedical Science, University of São Paulo, São Paulo, São Paulo, Brazil bFood Research Center, Department of Food Sciences Experimental Nutrition, Faculty of Pharmaceutical Sciences, University of São Paulo, São Paulo, São Paulo, Brazil cInstituto Federal de Minas Gerais, Bambuí, Minas Gerais, Brazil, Michela Gambino
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-08T08:00:00Z
DOI: 10.1128/msystems.00564-22
- Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital
Microbiome Analyses
Authors: Tanya Kumar; MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M. Tubb, Sawyer Farmer, Emily S. Lukacz, Linda Brubaker, Rob Knight aMedical Scientist Training Program, University of California San Diego, La Jolla, California, USA bDepartment of Pediatrics, University of California San Diego, La Jolla, California, USA cDepartment of Computer Science Reproductive Sciences, University of California San Diego, La Jolla, California, USA fDepartment of Bioengineering, University of California San Diego, La Jolla, California, USA, Jotham Suez
Abstract: mSystems, Ahead of Print.
Citation: mSystems
PubDate: 2022-12-08T08:00:00Z
DOI: 10.1128/msystems.01029-22
