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  Subjects -> COMPUTER SCIENCE (Total: 1974 journals)
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    - COMPUTER SCIENCE (1148 journals)
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    - THEORY OF COMPUTING (8 journals)

COMPUTER SCIENCE (1148 journals)            First | 1 2 3 4 5 6     

Showing 801 - 872 of 872 Journals sorted alphabetically
Journal of Second Language Writing     Hybrid Journal   (Followers: 14)
Journal of Sensor Technology     Open Access   (Followers: 3)
Journal of Sensors     Open Access   (Followers: 21)
Journal of Signal Processing Systems     Hybrid Journal  
Journal of Software : Evolution and Process     Hybrid Journal   (Followers: 8)
Journal of Software Engineering     Open Access   (Followers: 14)
Journal of Solar Energy Engineering     Full-text available via subscription   (Followers: 18)
Journal of Spatial Information Science     Open Access   (Followers: 4)
Journal of Statistical Software     Open Access   (Followers: 14)
Journal of Symbolic Computation     Hybrid Journal   (Followers: 1)
Journal of Systems and Software     Hybrid Journal   (Followers: 8)
Journal of Systems Architecture     Hybrid Journal   (Followers: 6)
Journal of Systems Integration     Open Access  
Journal of Systems Science and Complexity     Hybrid Journal   (Followers: 4)
Journal of Systems Science and Systems Engineering     Hybrid Journal   (Followers: 1)
Journal of the ACM     Full-text available via subscription   (Followers: 6)
Journal of the American Medical Informatics Association : JAMIA     Hybrid Journal   (Followers: 24)
Journal of the Association for History and Computing     Open Access   (Followers: 4)
Journal of the Brazilian Computer Society     Open Access  
Journal of the Text Encoding Initiative     Open Access   (Followers: 1)
Journal of Theoretical and Computational Chemistry     Hybrid Journal   (Followers: 8)
Journal of Transplantation     Open Access   (Followers: 2)
Journal of Transportation Systems Engineering and Information Technology     Full-text available via subscription   (Followers: 15)
Journal of Turbulence     Hybrid Journal   (Followers: 3)
Journal of Urban Regeneration & Renewal     Full-text available via subscription   (Followers: 13)
Journal of Visual Communication and Image Representation     Hybrid Journal   (Followers: 10)
Journal of VLSI Design Tools & Technology     Full-text available via subscription   (Followers: 2)
Journal of Water and Land Development     Open Access   (Followers: 2)
Journal of Zhejiang University SCIENCE C     Hybrid Journal  
Journal on Chain and Network Science     Full-text available via subscription   (Followers: 1)
Journal on Data Semantics     Hybrid Journal   (Followers: 3)
Journal on Multimodal User Interfaces     Hybrid Journal   (Followers: 2)
Jurnal Ilmu Komputer dan Informasi     Open Access  
Jurnal Informatika     Open Access   (Followers: 1)
Jurnal Informatika     Open Access   (Followers: 2)
Jurnal INKOM : Jurnal Informatika, Sistem Kendali dan Komputer     Open Access  
Jurnal Sistem Komputer     Open Access   (Followers: 1)
Jurnal Teknologi dan Sistem Komputer     Open Access  
Karbala International Journal of Modern Science     Open Access   (Followers: 3)
Khazanah Informatika     Open Access  
KI - Künstliche Intelligenz     Hybrid Journal  
Knowledge and Information Systems     Hybrid Journal   (Followers: 10)
Knowledge Management Research & Practice     Hybrid Journal   (Followers: 20)
Kybernetes     Hybrid Journal   (Followers: 1)
Landscape and Ecological Engineering     Hybrid Journal   (Followers: 4)
Language & Communication     Hybrid Journal   (Followers: 18)
Language Resources and Evaluation     Hybrid Journal   (Followers: 7)
Latin American Journal of Computing     Open Access  
Learning Technologies, IEEE Transactions on     Hybrid Journal   (Followers: 14)
Lecture Notes in Computer Science     Hybrid Journal   (Followers: 4)
Leibniz Transactions on Embedded Systems     Open Access  
Leonardo     Hybrid Journal   (Followers: 9)
Library Hi Tech News     Hybrid Journal   (Followers: 790)
Literary and Linguistic Computing     Hybrid Journal   (Followers: 5)
Logic and Analysis     Hybrid Journal  
Logica Universalis     Hybrid Journal  
Macromolecular Reaction Engineering     Hybrid Journal  
Magnetics Letters, IEEE     Hybrid Journal   (Followers: 7)
Management International Review     Hybrid Journal   (Followers: 8)
Management of Environmental Quality: An International Journal     Hybrid Journal   (Followers: 5)
Manufacturing Engineer     Hybrid Journal   (Followers: 9)
Marine Genomics     Hybrid Journal   (Followers: 1)
Masaryk University Journal of Law and Technology     Full-text available via subscription  
Materials Science in Semiconductor Processing     Hybrid Journal   (Followers: 3)
Mathematical and Computer Modelling of Dynamical Systems: Methods, Tools and Applications in Engineering and Related Sciences     Hybrid Journal   (Followers: 1)
Mathematical Computation     Open Access   (Followers: 1)
Mathematical Problems in Engineering     Open Access   (Followers: 3)
Mathematics in Computer Science     Hybrid Journal   (Followers: 2)
MATICS     Open Access   (Followers: 1)
Measurement Science Review     Open Access   (Followers: 2)
Mediators of Inflammation     Open Access   (Followers: 4)
Medical and Biological Engineering and Computing     Hybrid Journal   (Followers: 2)
Medical Informatics and Engineering     Open Access   (Followers: 1)
Memetic Computing     Hybrid Journal  
Mendeleev Communications     Full-text available via subscription  
Metals and Materials International     Hybrid Journal   (Followers: 1)
Metascience     Hybrid Journal   (Followers: 1)
Method & Theory in the Study of Religion     Hybrid Journal   (Followers: 11)
Methodology And Computing In Applied Probability     Hybrid Journal   (Followers: 3)
Methods in Next Generation Sequencing     Hybrid Journal   (Followers: 1)
Microbial Informatics and Experimentation     Open Access   (Followers: 1)
Microprocessors and Microsystems     Hybrid Journal   (Followers: 15)
Microsystem Technologies     Hybrid Journal   (Followers: 26)
Mobile Computing     Open Access   (Followers: 1)
Mobile Information Systems     Open Access   (Followers: 28)
Mobile Networks and Applications     Hybrid Journal   (Followers: 6)
Modeling, Identification and Control     Open Access  
Modelling and Simulation in Engineering     Open Access   (Followers: 3)
Modelling and Simulation in Materials Science and Engineering     Hybrid Journal   (Followers: 7)
Molecular Simulation     Hybrid Journal   (Followers: 3)
Moscow University Computational Mathematics and Cybernetics     Hybrid Journal  
Multidimensional Systems and Signal Processing     Hybrid Journal  
Multimedia Systems     Hybrid Journal  
Multimedia Tools and Applications     Hybrid Journal   (Followers: 2)
Multiscale Modeling and Simulation     Hybrid Journal   (Followers: 3)
Nano Research     Hybrid Journal   (Followers: 2)
Nanotechnologies in Russia     Hybrid Journal   (Followers: 1)
Nanotechnology Magazine, IEEE     Full-text available via subscription   (Followers: 31)
National Science Review     Hybrid Journal  
Natural Computing     Hybrid Journal   (Followers: 1)
Natural Language & Linguistic Theory     Hybrid Journal   (Followers: 11)
Netcom     Open Access  
Network and Communication Technologies     Open Access   (Followers: 6)
Network: Computation in Neural Systems     Hybrid Journal   (Followers: 6)
Networks and Spatial Economics     Hybrid Journal   (Followers: 1)
Networks: an International Journal     Hybrid Journal   (Followers: 5)
Neural Computation     Hybrid Journal   (Followers: 12)
Neural Computing and Applications     Hybrid Journal   (Followers: 1)
Neural Networks     Hybrid Journal   (Followers: 13)
Neural Processing Letters     Hybrid Journal   (Followers: 2)
Neurocomputing     Hybrid Journal   (Followers: 7)
Neuroscience of Decision Making     Open Access   (Followers: 6)
New computer technology     Open Access   (Followers: 1)
New Generation Computing     Hybrid Journal  
New Mathematics and Natural Computation     Hybrid Journal  
New Review of Hypermedia and Multimedia     Hybrid Journal   (Followers: 2)
Nexus Network Journal     Hybrid Journal   (Followers: 2)
Nonlinear Analysis : Theory, Methods & Applications     Hybrid Journal   (Followers: 2)
npj Computational Materials     Open Access  
npj Quantum Information     Open Access  
Numerische Mathematik     Hybrid Journal  
Online Information Review     Hybrid Journal   (Followers: 164)
Open Computer Science     Open Access   (Followers: 1)
Open Systems & Information Dynamics     Hybrid Journal   (Followers: 10)
Operations Research Letters     Hybrid Journal   (Followers: 6)
Optical Communications and Networking, IEEE/OSA Journal of     Full-text available via subscription   (Followers: 14)
Optical Memory and Neural Networks     Hybrid Journal   (Followers: 2)
Optical Switching and Networking     Hybrid Journal   (Followers: 3)
Optimal Control Applications and Methods     Hybrid Journal  
Optimization and Engineering     Hybrid Journal   (Followers: 4)
Optimization Methods and Software     Hybrid Journal   (Followers: 6)
Order     Hybrid Journal  
ORiON     Open Access  
Pacific Asia Journal of the Association for Information Systems     Open Access   (Followers: 4)
Paladyn, Journal of Behavioral Robotics     Open Access  
Parallel Computing     Hybrid Journal   (Followers: 6)
Parallel Processing Letters     Hybrid Journal   (Followers: 4)
Pattern Analysis and Applications     Hybrid Journal  
Pattern Recognition     Hybrid Journal   (Followers: 17)
Pattern Recognition and Image Analysis     Hybrid Journal   (Followers: 5)
Pattern Recognition in Physics     Open Access   (Followers: 1)
Pattern Recognition Letters     Hybrid Journal   (Followers: 9)
Peer-to-Peer Networking and Applications     Hybrid Journal  
Performance Evaluation     Hybrid Journal   (Followers: 3)
Performance Measurement and Metrics     Hybrid Journal   (Followers: 7)
Personal and Ubiquitous Computing     Hybrid Journal   (Followers: 5)
Pervasive and Mobile Computing     Hybrid Journal   (Followers: 8)
Petroleum Science     Full-text available via subscription   (Followers: 1)
Photonic Network Communications     Hybrid Journal   (Followers: 2)
Planning Theory     Hybrid Journal   (Followers: 8)
Planning Theory & Practice     Hybrid Journal   (Followers: 8)
Plasma Chemistry and Plasma Processing     Hybrid Journal   (Followers: 5)
PLoS Computational Biology     Open Access   (Followers: 133)
Polar Science     Hybrid Journal   (Followers: 4)
Political Theory     Hybrid Journal   (Followers: 23)
Popular Science     Full-text available via subscription   (Followers: 32)
Potential Analysis     Hybrid Journal   (Followers: 1)
Precision Engineering     Hybrid Journal   (Followers: 33)
Preservation, Digital Technology & Culture (PDT&C)     Hybrid Journal   (Followers: 14)
Probability Theory and Related Fields     Hybrid Journal   (Followers: 4)
Procedia Computer Science     Open Access  
Proceedings of the American Society for Information Science and Technology     Hybrid Journal   (Followers: 28)
Proceedings of the Institution of Civil Engineers - Engineering and Computational Mechanics     Hybrid Journal   (Followers: 2)
Proceedings of the Institution of Civil Engineers - Engineering Sustainability     Hybrid Journal   (Followers: 5)
Process Metallurgy     Full-text available via subscription   (Followers: 3)
Program: Electronic Library and Information Systems     Hybrid Journal   (Followers: 308)
Progress in Agricultural Engineering Sciences     Full-text available via subscription  
Progress in Photovoltaics: Research & Applications     Hybrid Journal   (Followers: 6)
Prometheus : Critical Studies in Innovation     Hybrid Journal   (Followers: 2)
Prose Studies: History, Theory, Criticism     Hybrid Journal   (Followers: 3)
Psychological Inquiry     Hybrid Journal   (Followers: 8)
Public Money & Management     Hybrid Journal   (Followers: 10)
Python Papers Source Codes     Open Access   (Followers: 4)
Qatar Foundation Annual Research Forum Proceedings     Open Access   (Followers: 3)
Quality Engineering     Hybrid Journal   (Followers: 9)
Queue     Full-text available via subscription   (Followers: 1)
Rare Metals     Hybrid Journal   (Followers: 1)
Real-Time Systems     Hybrid Journal   (Followers: 6)
Reflective Practice     Hybrid Journal   (Followers: 3)
REICIS Revista Española de Innovacion, Calidad e Ingenieria del Software     Open Access  
Reliable Computing     Hybrid Journal   (Followers: 1)
RENOTE     Open Access  
Requirements Engineering     Hybrid Journal   (Followers: 3)
Research & Reviews : Journal of Computational Biology     Full-text available via subscription   (Followers: 4)
Research Ideas and Outcomes     Open Access  
Research in Electronic Commerce Frontiers     Open Access   (Followers: 1)
Research in Engineering Design     Hybrid Journal   (Followers: 11)
Research in Nondestructive Evaluation     Hybrid Journal   (Followers: 5)
Research Journal of Economics, Business and ICT     Open Access  
Research Journal of Information Technology     Open Access   (Followers: 5)
Research on Language and Computation     Hybrid Journal   (Followers: 3)
Rethinking History: The Journal of Theory and Practice     Hybrid Journal   (Followers: 27)
Review of Communication     Hybrid Journal   (Followers: 5)
ReVisión     Open Access  
Revista de Ciências da Computação     Open Access  
Revista Publicando     Open Access  
Revue pro právo a technologie     Open Access  
RISTI : Revista Ibérica de Sistemas e Tecnologias de Informação     Open Access  
Rutgers Computer and Technology Law Journal     Free   (Followers: 4)
Sba: Controle & Automação Sociedade Brasileira de Automatica     Open Access  

  First | 1 2 3 4 5 6     

In Silico Biology
  [2 followers]  Follow
    
  This is an Open Access Journal Open Access journal
   ISSN (Print) 1386-6338 - ISSN (Online) 1434-3207
   This journal is no longer being updated because:
   
  • A simple model for Lutz and Bujard's controllable promoters and its
           application for analyzing a simple genetic oscillator

    • Abstract: We develop an exact and flexible mathematical model for Lutz and Bujard's controllable promoters. It can be used as a building block for modeling genetic systems based on them. Special attention is paid to deduce all the model parameters from reported (in vitro) experimental data. We validate our model by comparing the regulatory ranges measured in vivo by Lutz and Bujard against the ranges predicted by the model, and which are calculated as the reporter activity obtained under inducing conditions divided by the activity measured under maximal repression. In particular, we verify Bond et al. assertion that the cooperativity between two lac operators can be assumed to be negligible when their central base pairs are separated by 22 or 32 bp [Gene repression by minimal lac loops in vivo, Nucleic Acids Res, 38 (2010) 8072–8082]. Moreover, we also find that the probability that two repressors LacI bind to these operators at the same time can be assumed to be negligible as well. We finally use the model for the promoter PLlacO-1 to analyze a synthetic genetic oscillator recently build by Stricker et al. [A fast, robust and tunable synthetic gene oscillator, Nature, 456 (2008) 516–519].
      Content Type Journal Article
      Pages -
      DOI 10.3233/ISB-150465
      Authors
      C. G. Zamora-Chimal, Centro de Investigación y de Estudios Avanzados del IPN, Unidad Monterrey, Parque de Investigación e Innovación Tecnológica, Apodaca NL, México
      M. S. Zeron, Centro de Investigación y de Estudios Avanzados del IPN, Departamento de Matemáticas, Av. Instituto Politécnico Nacional México DF, México
      Journal In Silico Biology
      Online ISSN 1386-6338
      PubDate: Thu, 26 Feb 2015 21:11:16 GMT
       
  • Exploiting stoichiometric redundancies for computational efficiency and
           network reduction

    • Abstract: Analysis of metabolic networks typically begins with construction of the stoichiometry matrix, which characterizes the network topology. This matrix provides, via the balance equation, a description of the potential steady-state flow distribution. This paper begins with the observation that the balance equation depends only on the structure of linear redundancies in the network, and so can be stated in a succinct manner, leading to computational efficiencies in steady-state analysis. This alternative description of steady-state behaviour is then used to provide a novel method for network reduction, which complements existing algorithms for describing intracellular networks in terms of input-output macro-reactions (to facilitate bioprocess optimization and control). Finally, it is demonstrated that this novel reduction method can be used to address elementary mode analysis of large networks: the modes supported by a reduced network can capture the input-output modes of a metabolic module with significantly reduced computational effort.
      Content Type Journal Article
      Pages -
      DOI 10.3233/ISB-140464
      Authors
      Brian P. Ingalls, Department of Applied Mathematics, University of Waterloo, Waterloo, Ontario, Canada
      Eric Bembenek, Department of Applied Mathematics, University of Waterloo, Waterloo, Ontario, Canada
      Journal In Silico Biology
      Online ISSN 1386-6338
      PubDate: Mon, 29 Dec 2014 20:34:07 GMT
       
  • The utility of simple mathematical models in understanding gene regulatory
           dynamics

    • Abstract: In this review, we survey work that has been carried out in the attempts of biomathematicians to understand the dynamic behaviour of simple bacterial operons starting with the initial work of the 1960's. We concentrate on the simplest of situations, discussing both repressible and inducible systems and then turning to concrete examples related to the biology of the lactose and tryptophan operons. We conclude with a brief discussion of the role of both extrinsic noise and so-called intrinsic noise in the form of translational and/or transcriptional bursting.
      Content Type Journal Article
      Category Review
      Pages -
      DOI 10.3233/ISB-140463
      Authors
      Michael C. Mackey, Departments of Physiology, Physics & Mathematics, McGill University, 3655 Promenade Sir William Osler, Montreal, Quebec H3G 1Y6, Canada
      Moisés Santillán, Centro de Investigación y de Estudios Avanzados del IPN, Unidad Monterrey, Vía del Conocimiento 201, Parque de Investigación e Innovación Tecnológica, Apodaca NL, México
      Marta Tyran-Kamińska, Institute of Mathematics, University of Silesia, Bankowa, Katowice, Poland
      Eduardo S. Zeron, Departamento de Matem'aticas, Centro de Investigaci'on y de Estudios Avanzados del IPN, Apartado Postal, M'exico DF, M'exico
      Journal In Silico Biology
      Online ISSN 1386-6338
      PubDate: Fri, 14 Nov 2014 22:15:28 GMT
       
  • In silico analysis of division times of Escherichia coli populations as a
           function of the partitioning scheme of non-functional proteins

    • Abstract: Recent evidence suggests that cells employ functionally asymmetric partitioning schemes in division to cope with aging. We explore various schemes in silico, with a stochastic model of Escherichia coli that includes gene expression, non-functional proteins generation, aggregation and polar retention, and molecule partitioning in division. The model is implemented in SGNS2, which allows stochastic, multi-delayed reactions within hierarchical, transient, interlinked compartments. After setting parameter values of non-functional proteins' generation and effects that reproduce realistic intracellular and population dynamics, we investigate how the spatial organization of non-functional proteins affects mean division times of cell populations in lineages and, thus, mean cell numbers over time. We find that division times decrease for increasingly asymmetric partitioning. Also, increasing the clustering of non-functional proteins decreases division times. Increasing the bias in polar segregation further decreases division times, particularly if the bias favors the older pole and aggregates' polar retention is robust. Finally, we show that the non-energy consuming retention of inherited non-functional proteins at the older pole via nucleoid occlusion is a source of functional asymmetries and, thus, is advantageous. Our results suggest that the mechanisms of intracellular organization of non-functional proteins, including clustering and polar retention, affect the vitality of E. coli populations.
      Content Type Journal Article
      Category Research
      Pages -
      DOI 10.3233/ISB-140462
      Authors
      Abhishekh Gupta, Laboratory of Biosystem Dynamics, Department of Signal Processing, Tampere University of Technology, Tampere, Finland
      Jason Lloyd-Price, Laboratory of Biosystem Dynamics, Department of Signal Processing, Tampere University of Technology, Tampere, Finland
      Andre S. Ribeiro, Laboratory of Biosystem Dynamics, Department of Signal Processing, Tampere University of Technology, Tampere, Finland
      Journal In Silico Biology
      Online ISSN 1386-6338
      PubDate: Mon, 13 Oct 2014 16:30:45 GMT
       
  • Limits of computational biology

    • Abstract: Are we close to a complete inventory of living processes so that we might expect in the near future to reproduce every essential aspect necessary for life' Or are there mechanisms and processes in cells and organisms that are presently inaccessible to us' Here I argue that a close examination of a particularly well-understood system—that of Escherichia coli chemotaxis—shows we are still a long way from a complete description. There is a level of molecular uncertainty, particularly that responsible for fine-tuning and adaptation to myriad external conditions, which we presently cannot resolve or reproduce on a computer. Moreover, the same uncertainty exists for any process in any organism and is especially pronounced and important in higher animals such as humans. Embryonic development, tissue homeostasis, immune recognition, memory formation, and survival in the real world, all depend on vast numbers of subtle variations in cell chemistry most of which are presently unknown or only poorly characterized. Overcoming these limitations will require us to not only accumulate large quantities of highly detailed data but also develop new computational methods able to recapitulate the massively parallel processing of living cells.
      Content Type Journal Article
      Category Opinion
      Pages -
      DOI 10.3233/ISB-140461
      Authors
      Dennis Bray, Department of Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK
      Journal In Silico Biology
      Online ISSN 1386-6338
      PubDate: Mon, 13 Oct 2014 16:30:00 GMT
       
 
 
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